HL_9RVC_061

3D structure

PDB id

9RVC (explore in PDB, NAKB, or RNA 3D Hub)

Description

staphylococcus aureus 70S initiation complex with natural mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGUUGAAAAG

Length

10 nucleotides

Bulged bases

9RVC|1|a|U|792, 9RVC|1|a|A|796, 9RVC|1|a|A|797

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9RVC_061 not in the Motif Atlas

Homologous match to HL_7A0S_022

Geometric discrepancy: 0.1001

The information below is about HL_7A0S_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50204.3

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

12

Unit IDs

9RVC|1|a|C|789
9RVC|1|a|G|790
9RVC|1|a|U|791
9RVC|1|a|U|792
9RVC|1|a|G|793
9RVC|1|a|A|794
9RVC|1|a|A|795
9RVC|1|a|A|796
9RVC|1|a|A|797
9RVC|1|a|G|798

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

Large ribosomal subunit protein bL34

Chain d

Large ribosomal subunit protein uL3

Chain r

Large ribosomal subunit protein uL22

Chain z

Large ribosomal subunit protein bL32