HL_9RVC_090

3D structure

PDB id

9RVC (explore in PDB, NAKB, or RNA 3D Hub)

Description

staphylococcus aureus 70S initiation complex with natural mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUUAUCG

Length

7 nucleotides

Bulged bases

9RVC|1|a|U|2238, 9RVC|1|a|U|2240

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9RVC_090 not in the Motif Atlas

Geometric match to HL_4WF9_048

Geometric discrepancy: 0.2591

The information below is about HL_4WF9_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33632.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

2

Unit IDs

9RVC|1|a|C|2236
9RVC|1|a|U|2237
9RVC|1|a|U|2238
9RVC|1|a|A|2239
9RVC|1|a|U|2240
9RVC|1|a|C|2241
9RVC|1|a|G|2242

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

Large ribosomal subunit protein uL2