HL_9RVC_106

3D structure

PDB id

9RVC (explore in PDB, NAKB, or RNA 3D Hub)

Description

staphylococcus aureus 70S initiation complex with natural mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AAAGAUGAU

Length

9 nucleotides

Bulged bases

9RVC|1|a|A|2840

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9RVC_106 not in the Motif Atlas

Homologous match to HL_7A0S_067

Geometric discrepancy: 0.4852

The information below is about HL_7A0S_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37889.3

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

13

Unit IDs

9RVC|1|a|A|2839
9RVC|1|a|A|2840
9RVC|1|a|A|2841
9RVC|1|a|G|2842
9RVC|1|a|A|2843
9RVC|1|a|U|2844
9RVC|1|a|G|2845
9RVC|1|a|A|2846
9RVC|1|a|U|2847

Current chains

Chain a

23S rRNA

Nearby chains

Chain d

Large ribosomal subunit protein uL3

Chain m

Large ribosomal subunit protein bL17