HL_9S7B_027

3D structure

PDB id

9S7B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human mitochondrial COX1-translating ribosome nascent chain complex with tRNAs in intermediate state (AP*)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UUG(OMG)GGCGA

Length

9 nucleotides

Bulged bases

9S7B|1|A|G|2814

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9S7B_027 not in the Motif Atlas

Homologous match to HL_8B0X_080

Geometric discrepancy: 0.1089

The information below is about HL_8B0X_080

Detailed Annotation

LSU P loop

Broad Annotation

LSU P loop

Motif group

HL_11974.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

19

Unit IDs

9S7B|1|A|U|2812
9S7B|1|A|U|2813
9S7B|1|A|G|2814
9S7B|1|A|OMG|2815
9S7B|1|A|G|2816
9S7B|1|A|G|2817
9S7B|1|A|C|2818
9S7B|1|A|G|2819
9S7B|1|A|A|2820

Current chains

Chain A

16S mitochondrial rRNA

Nearby chains

Chain Aw

Transfer RNA; tRNA

Chain Ax

Transfer RNA; tRNA

Chain N

Large ribosomal subunit protein uL16m

Chain W

Large ribosomal subunit protein bL27m