HL_9S7D_009

3D structure

PDB id

9S7D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human mitochondrial COX1-translating ribosome nascent chain-OXA1L/MITRAC complex in open state (open COX1-mtRNC-OXA1L/MITRAC)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GCGACAAAC

Length

9 nucleotides

Bulged bases

9S7D|1|A|A|1991, 9S7D|1|A|A|1994

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9S7D_009 not in the Motif Atlas

Geometric match to HL_9E6Q_025

Geometric discrepancy: 0.217

The information below is about HL_9E6Q_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_28253.1

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

9S7D|1|A|G|1988
9S7D|1|A|C|1989
9S7D|1|A|G|1990
9S7D|1|A|A|1991
9S7D|1|A|C|1992
9S7D|1|A|A|1993
9S7D|1|A|A|1994
9S7D|1|A|A|1995
9S7D|1|A|C|1996

Current chains

Chain A

16S mitochondrial rRNA

Nearby chains

Chain 2

Large ribosomal subunit protein bL34m

Chain D

Large ribosomal subunit protein uL2m