HL_9E6Q_025

3D structure

PDB id

9E6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Pyrobaculum calidifontis 50S ribosomal subunit in complex with Dri

Experimental method

ELECTRON MICROSCOPY

Resolution

1.95 Å

Loop

Sequence

GCAAAA(OMG)AC

Length

9 nucleotides

Bulged bases

9E6Q|1|1|A|899, 9E6Q|1|1|OMG|902

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_92598.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

13

Unit IDs

9E6Q|1|1|G|896
9E6Q|1|1|C|897
9E6Q|1|1|A|898
9E6Q|1|1|A|899
9E6Q|1|1|A|900
9E6Q|1|1|A|901
9E6Q|1|1|OMG|902
9E6Q|1|1|A|903
9E6Q|1|1|C|904

Current chains

Chain 1

23S rRNA

Nearby chains

Chain AA

Large ribosomal subunit protein uL2

Chain Ad

Large ribosomal subunit protein eL37