HL_9S7E_027

3D structure

PDB id

9S7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human mitochondrial COX1-translating ribosome nascent chain-OXA1L/MITRAC complex in closed state (closed COX1-mtRNC-OXA1L/MITRAC)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUG(OMG)GGCGA

Length

9 nucleotides

Bulged bases

9S7E|1|A|G|2814

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9S7E_027 not in the Motif Atlas

Homologous match to HL_8B0X_080

Geometric discrepancy: 0.1045

The information below is about HL_8B0X_080

Detailed Annotation

LSU P loop

Broad Annotation

LSU P loop

Motif group

HL_11974.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

19

Unit IDs

9S7E|1|A|U|2812
9S7E|1|A|U|2813
9S7E|1|A|G|2814
9S7E|1|A|OMG|2815
9S7E|1|A|G|2816
9S7E|1|A|G|2817
9S7E|1|A|C|2818
9S7E|1|A|G|2819
9S7E|1|A|A|2820

Current chains

Chain A

16S mitochondrial rRNA

Nearby chains

Chain Ax

Transfer RNA; tRNA

Chain N

Large ribosomal subunit protein uL16m

Chain W

Large ribosomal subunit protein bL27m