HL_9S7E_066

3D structure

PDB id

9S7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human mitochondrial COX1-translating ribosome nascent chain-OXA1L/MITRAC complex in closed state (closed COX1-mtRNC-OXA1L/MITRAC)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUAACACAAA

Length

10 nucleotides

Bulged bases

9S7E|1|B|U|13, 9S7E|1|B|C|19

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9S7E_066 not in the Motif Atlas

Homologous match to HL_5B63_003

Geometric discrepancy: 0.2692

The information below is about HL_5B63_003

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20490.1

Basepair signature

cWW-cWS-F

Number of instances in this motif group

13

Unit IDs

9S7E|1|B|U|12
9S7E|1|B|U|13
9S7E|1|B|A|14
9S7E|1|B|A|15
9S7E|1|B|C|16
9S7E|1|B|A|18
9S7E|1|B|C|19
9S7E|1|B|A|20
9S7E|1|B|A|21
9S7E|1|B|A|23

Current chains

Chain B

mitochondrial tRNA-Val

Nearby chains

Chain 6

Large ribosomal subunit protein mL38

Chain P

Large ribosomal subunit protein uL18m