HL_9SLG_017

3D structure

PDB id

9SLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Doxycycline Bound E. coli Ribosome with Rearranged Peptidyl Transferase Centre

Experimental method

ELECTRON MICROSCOPY

Resolution

2.16 Å

Loop

Sequence

GAUUAGAUACC

Length

11 nucleotides

Bulged bases

9SLG|1|A|U|793

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SLG_017 not in the Motif Atlas

Homologous match to HL_6CZR_088

Geometric discrepancy: 0.1528

The information below is about HL_6CZR_088

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.4

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

13

Unit IDs

9SLG|1|A|G|786
9SLG|1|A|A|787
9SLG|1|A|U|788
9SLG|1|A|U|789
9SLG|1|A|A|790
9SLG|1|A|G|791
9SLG|1|A|A|792
9SLG|1|A|U|793
9SLG|1|A|A|794
9SLG|1|A|C|795
9SLG|1|A|C|796

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain K

Small ribosomal subunit protein uS11

Chain Y

Ribosome-associated inhibitor A

Chain a

Large subunit ribosomal RNA; LSU rRNA