HL_9SLG_042

3D structure

PDB id

9SLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Doxycycline Bound E. coli Ribosome with Rearranged Peptidyl Transferase Centre

Experimental method

ELECTRON MICROSCOPY

Resolution

2.16 Å

Loop

Sequence

GUGACAGCC

Length

9 nucleotides

Bulged bases

9SLG|1|a|G|329, 9SLG|1|a|A|330, 9SLG|1|a|C|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SLG_042 not in the Motif Atlas

Homologous match to HL_7A0S_012

Geometric discrepancy: 0.3685

The information below is about HL_7A0S_012

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.5

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

17

Unit IDs

9SLG|1|a|G|327
9SLG|1|a|U|328
9SLG|1|a|G|329
9SLG|1|a|A|330
9SLG|1|a|C|331
9SLG|1|a|A|332
9SLG|1|a|G|333
9SLG|1|a|C|334
9SLG|1|a|C|335

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain e

Large ribosomal subunit protein uL4

Chain t

Large ribosomal subunit protein uL24