HL_9SLG_044

3D structure

PDB id

9SLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Doxycycline Bound E. coli Ribosome with Rearranged Peptidyl Transferase Centre

Experimental method

ELECTRON MICROSCOPY

Resolution

2.16 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

9SLG|1|a|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SLG_044 not in the Motif Atlas

Homologous match to HL_7A0S_014

Geometric discrepancy: 0.1126

The information below is about HL_7A0S_014

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

9SLG|1|a|G|410
9SLG|1|a|G|411
9SLG|1|a|A|412
9SLG|1|a|C|413
9SLG|1|a|C|414
9SLG|1|a|A|415
9SLG|1|a|U|416
9SLG|1|a|C|417

Current chains

Chain a

23S ribosomal RNA

Nearby chains