HL_9SLG_049

3D structure

PDB id

9SLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Doxycycline Bound E. coli Ribosome with Rearranged Peptidyl Transferase Centre

Experimental method

ELECTRON MICROSCOPY

Resolution

2.16 Å

Loop

Sequence

CGAAUAG

Length

7 nucleotides

Bulged bases

9SLG|1|a|U|617

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SLG_049 not in the Motif Atlas

Geometric match to HL_8B0X_049

Geometric discrepancy: 0.1735

The information below is about HL_8B0X_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

9SLG|1|a|C|613
9SLG|1|a|G|614
9SLG|1|a|A|615
9SLG|1|a|A|616
9SLG|1|a|U|617
9SLG|1|a|A|618
9SLG|1|a|G|619

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain e

Large ribosomal subunit protein uL4