HL_9SLG_059

3D structure

PDB id

9SLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Doxycycline Bound E. coli Ribosome with Rearranged Peptidyl Transferase Centre

Experimental method

ELECTRON MICROSCOPY

Resolution

2.16 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

9SLG|1|a|A|1072

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SLG_059 not in the Motif Atlas

Homologous match to HL_6PRV_001

Geometric discrepancy: 0.4036

The information below is about HL_6PRV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20174.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

9SLG|1|a|C|1066
9SLG|1|a|U|1067
9SLG|1|a|U|1068
9SLG|1|a|A|1069
9SLG|1|a|G|1070
9SLG|1|a|A|1071
9SLG|1|a|A|1072
9SLG|1|a|G|1073
9SLG|1|a|C|1074
9SLG|1|a|A|1075
9SLG|1|a|G|1076

Current chains

Chain a

23S ribosomal RNA

Nearby chains