HL_9SLG_067

3D structure

PDB id

9SLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Doxycycline Bound E. coli Ribosome with Rearranged Peptidyl Transferase Centre

Experimental method

ELECTRON MICROSCOPY

Resolution

2.16 Å

Loop

Sequence

CGACGGUUG

Length

9 nucleotides

Bulged bases

9SLG|1|a|A|1455, 9SLG|1|a|C|1456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SLG_067 not in the Motif Atlas

Geometric match to HL_8B0X_064

Geometric discrepancy: 0.0499

The information below is about HL_8B0X_064

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_00557.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

2

Unit IDs

9SLG|1|a|C|1453
9SLG|1|a|G|1454
9SLG|1|a|A|1455
9SLG|1|a|C|1456
9SLG|1|a|G|1457
9SLG|1|a|G|1458
9SLG|1|a|U|1459
9SLG|1|a|U|1460
9SLG|1|a|G|1461

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain m

Large ribosomal subunit protein bL17