HL_9SLG_083

3D structure

PDB id

9SLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Doxycycline Bound E. coli Ribosome with Rearranged Peptidyl Transferase Centre

Experimental method

ELECTRON MICROSCOPY

Resolution

2.16 Å

Loop

Sequence

CUGAUCG

Length

7 nucleotides

Bulged bases

9SLG|1|a|G|2215, 9SLG|1|a|U|2217

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SLG_083 not in the Motif Atlas

Geometric match to HL_8B0X_079

Geometric discrepancy: 0.0679

The information below is about HL_8B0X_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_42293.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

5

Unit IDs

9SLG|1|a|C|2213
9SLG|1|a|U|2214
9SLG|1|a|G|2215
9SLG|1|a|A|2216
9SLG|1|a|U|2217
9SLG|1|a|C|2218
9SLG|1|a|G|2219

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain c

Large ribosomal subunit protein uL2