HL_9SLG_090

3D structure

PDB id

9SLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Doxycycline Bound E. coli Ribosome with Rearranged Peptidyl Transferase Centre

Experimental method

ELECTRON MICROSCOPY

Resolution

2.16 Å

Loop

Sequence

UGAAUGGAAG

Length

10 nucleotides

Bulged bases

9SLG|1|a|A|2410

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SLG_090 not in the Motif Atlas

Homologous match to HL_7A0S_058

Geometric discrepancy: 0.19

The information below is about HL_7A0S_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51853.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

9SLG|1|a|U|2408
9SLG|1|a|G|2409
9SLG|1|a|A|2410
9SLG|1|a|A|2411
9SLG|1|a|U|2412
9SLG|1|a|G|2413
9SLG|1|a|G|2414
9SLG|1|a|A|2415
9SLG|1|a|A|2416
9SLG|1|a|G|2417

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain k

Large ribosomal subunit protein uL15