HL_9SPF_083

3D structure

PDB id

9SPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF HUMAN 80S RIBOSOME WITH A/P/E-SITE TRNA AND MRNA CONTAINING N1-METHYLPSEUDOURIDINE

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

ACU(PSU)(PSU)AA(A2M)UCCUU

Length

13 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SPF|1|S2|A|569
9SPF|1|S2|C|570
9SPF|1|S2|U|571
9SPF|1|S2|PSU|572
9SPF|1|S2|PSU|573
9SPF|1|S2|A|574
9SPF|1|S2|A|575
9SPF|1|S2|A2M|576
9SPF|1|S2|U|577
9SPF|1|S2|C|578
9SPF|1|S2|C|579
9SPF|1|S2|U|580
9SPF|1|S2|U|581

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SJ

40S ribosomal protein S9

Chain SY

40S ribosomal protein S24