HL_9SPF_098

3D structure

PDB id

9SPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF HUMAN 80S RIBOSOME WITH A/P/E-SITE TRNA AND MRNA CONTAINING N1-METHYLPSEUDOURIDINE

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

AUUGCAAUUAU(PSU)

Length

12 nucleotides

Bulged bases

9SPF|1|S2|U|1621, 9SPF|1|S2|U|1622, 9SPF|1|S2|A|1623

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SPF|1|S2|A|1614
9SPF|1|S2|U|1615
9SPF|1|S2|U|1616
9SPF|1|S2|G|1617
9SPF|1|S2|C|1618
9SPF|1|S2|A|1619
9SPF|1|S2|A|1620
9SPF|1|S2|U|1621
9SPF|1|S2|U|1622
9SPF|1|S2|A|1623
9SPF|1|S2|U|1624
9SPF|1|S2|PSU|1625

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SP

40S ribosomal protein S15

Chain SS

40S ribosomal protein S18

Chain ST

40S ribosomal protein S19

Chain Sd

40S ribosomal protein S29