HL_9SPF_099

3D structure

PDB id

9SPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF HUMAN 80S RIBOSOME WITH A/P/E-SITE TRNA AND MRNA CONTAINING N1-METHYLPSEUDOURIDINE

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GUCAUAAGC

Length

9 nucleotides

Bulged bases

9SPF|1|S2|C|1660, 9SPF|1|S2|G|1665

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SPF|1|S2|G|1658
9SPF|1|S2|U|1659
9SPF|1|S2|C|1660
9SPF|1|S2|A|1661
9SPF|1|S2|U|1662
9SPF|1|S2|A|1663
9SPF|1|S2|A|1664
9SPF|1|S2|G|1665
9SPF|1|S2|C|1666

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SQ

40S ribosomal protein S16

Chain ST

40S ribosomal protein S19

Chain SU

40S ribosomal protein S20

Chain Sd

40S ribosomal protein S29