HL_9SPI_053

3D structure

PDB id

9SPI (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF HUMAN 80S RIBOSOME WITH A/P/E-SITE TRNA AND MRNA CONTAINING URIDINE

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

U(PSU)UGGGUUU(PSU)A

Length

11 nucleotides

Bulged bases

9SPI|1|L5|U|4354

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SPI|1|L5|U|4352
9SPI|1|L5|PSU|4353
9SPI|1|L5|U|4354
9SPI|1|L5|G|4355
9SPI|1|L5|G|4356
9SPI|1|L5|G|4357
9SPI|1|L5|U|4358
9SPI|1|L5|U|4359
9SPI|1|L5|U|4360
9SPI|1|L5|PSU|4361
9SPI|1|L5|A|4362

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LL

Large ribosomal subunit protein eL13

Chain La

Large ribosomal subunit protein uL15

Chain Li

60S ribosomal protein L36

Chain Lo

Large ribosomal subunit protein eL42