HL_9SPI_067

3D structure

PDB id

9SPI (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF HUMAN 80S RIBOSOME WITH A/P/E-SITE TRNA AND MRNA CONTAINING URIDINE

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CACUUG

Length

6 nucleotides

Bulged bases

9SPI|1|L8|U|111

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SPI_067 not in the Motif Atlas

Homologous match to HL_8GLP_080

Geometric discrepancy: 0.0812

The information below is about HL_8GLP_080

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_23875.2

Basepair signature

cWW-cSW-F

Number of instances in this motif group

18

Unit IDs

9SPI|1|L8|C|107
9SPI|1|L8|A|108
9SPI|1|L8|C|109
9SPI|1|L8|U|110
9SPI|1|L8|U|111
9SPI|1|L8|G|112

Current chains

Chain L8

5.8S rRNA

Nearby chains

Chain L5

Large subunit ribosomal RNA; LSU rRNA

Chain LX

60S ribosomal protein L23a

Chain Lj

Large ribosomal subunit protein eL37

Chain Ll

60S ribosomal protein L39