HL_9SRA_013

3D structure

PDB id

9SRA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi HibA:ribosome with an SD:antiSD duplex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CUGGAACG

Length

8 nucleotides

Bulged bases

9SRA|1|1|C|466

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SRA_013 not in the Motif Atlas

Homologous match to HL_4V9F_010

Geometric discrepancy: 0.1139

The information below is about HL_4V9F_010

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_13999.5

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

24

Unit IDs

9SRA|1|1|C|460
9SRA|1|1|U|461
9SRA|1|1|G|462
9SRA|1|1|G|463
9SRA|1|1|A|464
9SRA|1|1|A|465
9SRA|1|1|C|466
9SRA|1|1|G|467

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain BU

Large ribosomal subunit protein uL24

Chain Bb

Large ribosomal subunit protein eL32