HL_9SRA_015

3D structure

PDB id

9SRA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi HibA:ribosome with an SD:antiSD duplex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GUUGGAUAUC

Length

10 nucleotides

Bulged bases

9SRA|1|1|U|544

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SRA_015 not in the Motif Atlas

Homologous match to HL_4V9F_013

Geometric discrepancy: 0.0815

The information below is about HL_4V9F_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91228.1

Basepair signature

cWW-cWW-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

9SRA|1|1|G|538
9SRA|1|1|U|539
9SRA|1|1|U|540
9SRA|1|1|G|541
9SRA|1|1|G|542
9SRA|1|1|A|543
9SRA|1|1|U|544
9SRA|1|1|A|545
9SRA|1|1|U|546
9SRA|1|1|C|547

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain BL

Large ribosomal subunit protein uL15

Chain BM

Large ribosomal subunit protein eL15

Chain Bj

Large ribosomal subunit protein eL42