HL_9SRA_018

3D structure

PDB id

9SRA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi HibA:ribosome with an SD:antiSD duplex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

(4AC)GGGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 4AC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SRA_018 not in the Motif Atlas

Homologous match to HL_4V9F_016

Geometric discrepancy: 0.5006

The information below is about HL_4V9F_016

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

434

Unit IDs

9SRA|1|1|4AC|641
9SRA|1|1|G|642
9SRA|1|1|G|643
9SRA|1|1|G|644
9SRA|1|1|A|645
9SRA|1|1|G|646

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain BS

Large ribosomal subunit protein uL22