HL_9SRA_050
3D structure
- PDB id
- 9SRA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. abyssi HibA:ribosome with an SD:antiSD duplex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- UUUAAUAAAAA
- Length
- 11 nucleotides
- Bulged bases
- 9SRA|1|1|A|2036, 9SRA|1|1|A|2037, 9SRA|1|1|U|2038, 9SRA|1|1|A|2042
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9SRA_050 not in the Motif Atlas
- Homologous match to HL_4V9F_047
- Geometric discrepancy: 0.0851
- The information below is about HL_4V9F_047
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_87681.3
- Basepair signature
- cWW-tWH-tWH-F
- Number of instances in this motif group
- 10
Unit IDs
9SRA|1|1|U|2033
9SRA|1|1|U|2034
9SRA|1|1|U|2035
9SRA|1|1|A|2036
9SRA|1|1|A|2037
9SRA|1|1|U|2038
9SRA|1|1|A|2039
9SRA|1|1|A|2040
9SRA|1|1|A|2041
9SRA|1|1|A|2042
9SRA|1|1|A|2043
Current chains
- Chain 1
- rRNA 23S
Nearby chains
- Chain BB
- Large ribosomal subunit protein uL2
- Chain Be
- Large ribosomal subunit protein eL37
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