HL_9SRA_058

3D structure

PDB id

9SRA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi HibA:ribosome with an SD:antiSD duplex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

9SRA|1|1|G|2480

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SRA_058 not in the Motif Atlas

Homologous match to HL_4V9F_055

Geometric discrepancy: 0.1221

The information below is about HL_4V9F_055

Detailed Annotation

LSU P loop

Broad Annotation

LSU P loop

Motif group

HL_11974.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

19

Unit IDs

9SRA|1|1|C|2478
9SRA|1|1|U|2479
9SRA|1|1|G|2480
9SRA|1|1|G|2481
9SRA|1|1|G|2482
9SRA|1|1|G|2483
9SRA|1|1|C|2484
9SRA|1|1|G|2485
9SRA|1|1|G|2486

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain BN

Large ribosomal subunit protein uL16

Chain H

Dehydrogenase