HL_9SRA_071
3D structure
- PDB id
- 9SRA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. abyssi HibA:ribosome with an SD:antiSD duplex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- CUGAAGGCAUCUAAG
- Length
- 15 nucleotides
- Bulged bases
- 9SRA|1|1|G|2981, 9SRA|1|1|C|2985
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9SRA_071 not in the Motif Atlas
- Homologous match to HL_4V9F_068
- Geometric discrepancy: 0.0927
- The information below is about HL_4V9F_068
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_53269.4
- Basepair signature
- cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW
- Number of instances in this motif group
- 12
Unit IDs
9SRA|1|1|C|2975
9SRA|1|1|U|2976
9SRA|1|1|G|2977
9SRA|1|1|A|2978
9SRA|1|1|A|2979
9SRA|1|1|G|2980
9SRA|1|1|G|2981
9SRA|1|1|C|2982
9SRA|1|1|A|2983
9SRA|1|1|U|2984
9SRA|1|1|C|2985
9SRA|1|1|U|2986
9SRA|1|1|A|2987
9SRA|1|1|A|2988
9SRA|1|1|G|2989
Current chains
- Chain 1
- rRNA 23S
Nearby chains
- Chain BF
- Large ribosomal subunit protein uL6
- Chain BI
- Large ribosomal subunit protein uL13
- Chain Bg
- Large ribosomal subunit protein eL40
Coloring options: