HL_9SRB_013

3D structure

PDB id

9SRB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA and SBDS

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CUGGAACG

Length

8 nucleotides

Bulged bases

9SRB|1|1|C|466

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SRB_013 not in the Motif Atlas

Homologous match to HL_4V9F_010

Geometric discrepancy: 0.1179

The information below is about HL_4V9F_010

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_13999.5

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

24

Unit IDs

9SRB|1|1|C|460
9SRB|1|1|U|461
9SRB|1|1|G|462
9SRB|1|1|G|463
9SRB|1|1|A|464
9SRB|1|1|A|465
9SRB|1|1|C|466
9SRB|1|1|G|467

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain BU

Large ribosomal subunit protein uL24

Chain Bb

Large ribosomal subunit protein eL32