HL_9SRB_033

3D structure

PDB id

9SRB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA and SBDS

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CGUAACAG

Length

8 nucleotides

Bulged bases

9SRB|1|1|C|1352

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SRB_033 not in the Motif Atlas

Homologous match to HL_5D8H_002

Geometric discrepancy: 0.5594

The information below is about HL_5D8H_002

Detailed Annotation

GNRA with tandem sheared

Broad Annotation

No text annotation

Motif group

HL_98423.5

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

9SRB|1|1|C|1347
9SRB|1|1|G|1348
9SRB|1|1|U|1349
9SRB|1|1|A|1350
9SRB|1|1|A|1351
9SRB|1|1|C|1352
9SRB|1|1|A|1353
9SRB|1|1|G|1354

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain A

Ribosome maturation protein SDO1 homolog

Chain BF

Large ribosomal subunit protein uL6

Chain Bg

Large ribosomal subunit protein eL40