HL_9SRD_014

3D structure

PDB id

9SRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (HibA-uL5 conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

GUGAUAGCC

Length

9 nucleotides

Bulged bases

9SRD|1|1|G|484, 9SRD|1|1|A|485, 9SRD|1|1|U|486

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SRD_014 not in the Motif Atlas

Homologous match to HL_4V9F_012

Geometric discrepancy: 0.2701

The information below is about HL_4V9F_012

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.6

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

17

Unit IDs

9SRD|1|1|G|482
9SRD|1|1|U|483
9SRD|1|1|G|484
9SRD|1|1|A|485
9SRD|1|1|U|486
9SRD|1|1|A|487
9SRD|1|1|G|488
9SRD|1|1|C|489
9SRD|1|1|C|490

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain BD

Large ribosomal subunit protein uL4

Chain BU

Large ribosomal subunit protein uL24