HL_9SRD_015

3D structure

PDB id

9SRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (HibA-uL5 conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

GUUGGAUAUC

Length

10 nucleotides

Bulged bases

9SRD|1|1|U|544

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SRD_015 not in the Motif Atlas

Homologous match to HL_4V9F_013

Geometric discrepancy: 0.0689

The information below is about HL_4V9F_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91228.1

Basepair signature

cWW-cWW-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

9SRD|1|1|G|538
9SRD|1|1|U|539
9SRD|1|1|U|540
9SRD|1|1|G|541
9SRD|1|1|G|542
9SRD|1|1|A|543
9SRD|1|1|U|544
9SRD|1|1|A|545
9SRD|1|1|U|546
9SRD|1|1|C|547

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain BL

Large ribosomal subunit protein uL15

Chain BM

Large ribosomal subunit protein eL15

Chain Bj

Large ribosomal subunit protein eL42