HL_9SRD_033

3D structure

PDB id

9SRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (HibA-uL5 conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

CGUAACAG

Length

8 nucleotides

Bulged bases

9SRD|1|1|C|1352

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SRD_033 not in the Motif Atlas

Homologous match to HL_5D8H_002

Geometric discrepancy: 0.5528

The information below is about HL_5D8H_002

Detailed Annotation

GNRA with tandem sheared

Broad Annotation

No text annotation

Motif group

HL_98423.5

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

9SRD|1|1|C|1347
9SRD|1|1|G|1348
9SRD|1|1|U|1349
9SRD|1|1|A|1350
9SRD|1|1|A|1351
9SRD|1|1|C|1352
9SRD|1|1|A|1353
9SRD|1|1|G|1354

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain Bg

Large ribosomal subunit protein eL40