HL_9SRD_046

3D structure

PDB id

9SRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (HibA-uL5 conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

UGAGAAG

Length

7 nucleotides

Bulged bases

9SRD|1|1|A|1908

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SRD_046 not in the Motif Atlas

Geometric match to HL_8GLP_046

Geometric discrepancy: 0.0709

The information below is about HL_8GLP_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

434

Unit IDs

9SRD|1|1|U|1904
9SRD|1|1|G|1905
9SRD|1|1|A|1906
9SRD|1|1|G|1907
9SRD|1|1|A|1908
9SRD|1|1|A|1909
9SRD|1|1|G|1910

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain BQ

Large ribosomal subunit protein eL19