HL_9SRD_050

3D structure

PDB id

9SRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (HibA-uL5 conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

UUUAAUAAAAA

Length

11 nucleotides

Bulged bases

9SRD|1|1|A|2036, 9SRD|1|1|A|2037, 9SRD|1|1|U|2038, 9SRD|1|1|A|2042

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SRD_050 not in the Motif Atlas

Homologous match to HL_4V9F_047

Geometric discrepancy: 0.073

The information below is about HL_4V9F_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87681.3

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

10

Unit IDs

9SRD|1|1|U|2033
9SRD|1|1|U|2034
9SRD|1|1|U|2035
9SRD|1|1|A|2036
9SRD|1|1|A|2037
9SRD|1|1|U|2038
9SRD|1|1|A|2039
9SRD|1|1|A|2040
9SRD|1|1|A|2041
9SRD|1|1|A|2042
9SRD|1|1|A|2043

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain BB

Large ribosomal subunit protein uL2

Chain Be

Large ribosomal subunit protein eL37