HL_9SRD_054

3D structure

PDB id

9SRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (HibA-uL5 conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

UUAAAUG

Length

7 nucleotides

Bulged bases

9SRD|1|1|U|2196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SRD_054 not in the Motif Atlas

Geometric match to HL_9G4Q_002

Geometric discrepancy: 0.3261

The information below is about HL_9G4Q_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_07380.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

3

Unit IDs

9SRD|1|1|U|2191
9SRD|1|1|U|2192
9SRD|1|1|A|2193
9SRD|1|1|A|2194
9SRD|1|1|A|2195
9SRD|1|1|U|2196
9SRD|1|1|G|2197

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain BJ

Large ribosomal subunit protein uL14