Motif HL_07380.1 Version HL_07380.1 of this group appears in releases 4.1 to 4.1
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 1-6 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_9G4Q_002 | 9G4Q | 0.4050 | 1 | A | salivarius-1 RNA | U | 35 | U | 36 | U | 37 | G | 38 | A | 39 | G | 41 | cWW | |
| 2 | HL_1U9S_001 | 1U9S | 0.0000 | 1 | GNRA | A | RNase P class A | G | 84 | U | 85 | A | 86 | A | 87 | C | 88 | C | 90 | cWW |
| 3 | HL_8B0X_051 | 8B0X | 0.7836 | 1 | a | LSU rRNA | U | 643 | U | 644 | A | 645 | A | 646 | C | 647 | G | 649 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUUGAGG | 1 |
| GUAACGC | 1 |
| UUAACUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUGAG | 1 |
| UAACG | 1 |
| UAACU | 1 |
Release history
| Release | 4.1 |
|---|---|
| Date | 2025-09-10 |
| Status | New id, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- GNRA (1)
- Basepair signature
- cWW-F-F-F-F
- Heat map statistics
- Min 0.41 | Avg 0.47 | Max 0.94
Coloring options: