HL_9SRD_059

3D structure

PDB id

9SRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (HibA-uL5 conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

(4AC)GAAAAGGUAUCG

Length

13 nucleotides

Bulged bases

9SRD|1|1|A|2499, 9SRD|1|1|C|2506

QA status

Modified nucleotides: 4AC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SRD_059 not in the Motif Atlas

Homologous match to HL_4V9F_056

Geometric discrepancy: 0.0867

The information below is about HL_4V9F_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02042.3

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

13

Unit IDs

9SRD|1|1|4AC|2495
9SRD|1|1|G|2496
9SRD|1|1|A|2497
9SRD|1|1|A|2498
9SRD|1|1|A|2499
9SRD|1|1|A|2500
9SRD|1|1|G|2501
9SRD|1|1|G|2502
9SRD|1|1|U|2503
9SRD|1|1|A|2504
9SRD|1|1|U|2505
9SRD|1|1|C|2506
9SRD|1|1|G|2507

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain BN

Large ribosomal subunit protein uL16

Chain BR

Large ribosomal subunit protein eL21