HL_9SRD_103
3D structure
- PDB id
- 9SRD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (HibA-uL5 conformation)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.1 Å
Loop
- Sequence
- GUCUCAUUUCGAACC
- Length
- 15 nucleotides
- Bulged bases
- 9SRD|1|3|U|41
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9SRD_103 not in the Motif Atlas
- Geometric match to HL_9DFE_067
- Geometric discrepancy: 0.1217
- The information below is about HL_9DFE_067
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_97756.4
- Basepair signature
- cWW-cSH-cWS-F-tSW-cSW-F-cWW-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
9SRD|1|3|G|34
9SRD|1|3|U|35
9SRD|1|3|C|36
9SRD|1|3|U|37
9SRD|1|3|C|38
9SRD|1|3|A|39
9SRD|1|3|U|40
9SRD|1|3|U|41
9SRD|1|3|U|42
9SRD|1|3|C|43
9SRD|1|3|G|44
9SRD|1|3|A|45
9SRD|1|3|A|46
9SRD|1|3|C|47
9SRD|1|3|C|48
Current chains
- Chain 3
- rRNA 5S
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain BE
- Large ribosomal subunit protein uL5
- Chain BO
- Large ribosomal subunit protein uL18
Coloring options: