HL_9SRE_013

3D structure

PDB id

9SRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (PTC conformation with E-site tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.11 Å

Loop

Sequence

CUGGAACG

Length

8 nucleotides

Bulged bases

9SRE|1|1|C|466

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SRE_013 not in the Motif Atlas

Homologous match to HL_4V9F_010

Geometric discrepancy: 0.1097

The information below is about HL_4V9F_010

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_13999.5

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

24

Unit IDs

9SRE|1|1|C|460
9SRE|1|1|U|461
9SRE|1|1|G|462
9SRE|1|1|G|463
9SRE|1|1|A|464
9SRE|1|1|A|465
9SRE|1|1|C|466
9SRE|1|1|G|467

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain BD

Large ribosomal subunit protein uL4

Chain BU

Large ribosomal subunit protein uL24

Chain Bb

Large ribosomal subunit protein eL32