HL_9SRE_015

3D structure

PDB id

9SRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (PTC conformation with E-site tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.11 Å

Loop

Sequence

GUUGGAUAUC

Length

10 nucleotides

Bulged bases

9SRE|1|1|U|544

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SRE_015 not in the Motif Atlas

Homologous match to HL_4V9F_013

Geometric discrepancy: 0.0783

The information below is about HL_4V9F_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91228.1

Basepair signature

cWW-cWW-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

9SRE|1|1|G|538
9SRE|1|1|U|539
9SRE|1|1|U|540
9SRE|1|1|G|541
9SRE|1|1|G|542
9SRE|1|1|A|543
9SRE|1|1|U|544
9SRE|1|1|A|545
9SRE|1|1|U|546
9SRE|1|1|C|547

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain BL

Large ribosomal subunit protein uL15

Chain BM

Large ribosomal subunit protein eL15

Chain Bj

Large ribosomal subunit protein eL42