HL_9SRE_054
3D structure
- PDB id
- 9SRE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (PTC conformation with E-site tRNA)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.11 Å
Loop
- Sequence
- UUAAAUG
- Length
- 7 nucleotides
- Bulged bases
- 9SRE|1|1|U|2196
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9SRE_054 not in the Motif Atlas
- Geometric match to HL_9G4Q_002
- Geometric discrepancy: 0.3282
- The information below is about HL_9G4Q_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_07380.1
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
9SRE|1|1|U|2191
9SRE|1|1|U|2192
9SRE|1|1|A|2193
9SRE|1|1|A|2194
9SRE|1|1|A|2195
9SRE|1|1|U|2196
9SRE|1|1|G|2197
Current chains
- Chain 1
- rRNA 23S
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain BJ
- Large ribosomal subunit protein uL14
- Chain H
- Dehydrogenase
Coloring options: