HL_9SRE_059
3D structure
- PDB id
- 9SRE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (PTC conformation with E-site tRNA)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.11 Å
Loop
- Sequence
- (4AC)GAAAAGGUAUCG
- Length
- 13 nucleotides
- Bulged bases
- 9SRE|1|1|A|2499, 9SRE|1|1|C|2506
- QA status
- Modified nucleotides: 4AC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9SRE_059 not in the Motif Atlas
- Homologous match to HL_4V9F_056
- Geometric discrepancy: 0.0821
- The information below is about HL_4V9F_056
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_02042.3
- Basepair signature
- cWW-tSH-tHH-tWW-F-F-F
- Number of instances in this motif group
- 13
Unit IDs
9SRE|1|1|4AC|2495
9SRE|1|1|G|2496
9SRE|1|1|A|2497
9SRE|1|1|A|2498
9SRE|1|1|A|2499
9SRE|1|1|A|2500
9SRE|1|1|G|2501
9SRE|1|1|G|2502
9SRE|1|1|U|2503
9SRE|1|1|A|2504
9SRE|1|1|U|2505
9SRE|1|1|C|2506
9SRE|1|1|G|2507
Current chains
- Chain 1
- rRNA 23S
Nearby chains
- Chain 3
- 5S ribosomal RNA; 5S rRNA
- Chain BN
- Large ribosomal subunit protein uL16
- Chain BR
- Large ribosomal subunit protein eL21
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