HL_9SRE_107
3D structure
- PDB id
- 9SRE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (PTC conformation with E-site tRNA)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.11 Å
Loop
- Sequence
- G(OMC)UCAUAAC
- Length
- 9 nucleotides
- Bulged bases
- 9SRE|1|4|C|34
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9SRE_107 not in the Motif Atlas
- Homologous match to HL_1J1U_002
- Geometric discrepancy: 0.3365
- The information below is about HL_1J1U_002
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_11974.4
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 19
Unit IDs
9SRE|1|4|G|31
9SRE|1|4|OMC|32
9SRE|1|4|U|33
9SRE|1|4|C|34
9SRE|1|4|A|35
9SRE|1|4|U|36
9SRE|1|4|A|37
9SRE|1|4|A|38
9SRE|1|4|C|39
Current chains
- Chain 4
- tRNAMet
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain AH
- 30S ribosomal protein S7
- Chain AM
- 30S ribosomal protein S11
- Chain AX
- 30S ribosomal protein S28e
- Chain H
- Dehydrogenase
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