HL_9SRO_028
3D structure
- PDB id
- 9SRO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of SKM-70S ribosomal stalled complex in the rotated state with hybrid tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- GAAAGGUAGAC
- Length
- 11 nucleotides
- Bulged bases
- 9SRO|1|Y|G|18, 9SRO|1|Y|G|19, 9SRO|1|Y|U|20
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9SRO_028 not in the Motif Atlas
- Homologous match to HL_1F7U_001
- Geometric discrepancy: 0.4444
- The information below is about HL_1F7U_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_55043.2
- Basepair signature
- cWW-tSH-cWS-F
- Number of instances in this motif group
- 5
Unit IDs
9SRO|1|Y|G|12
9SRO|1|Y|A|13
9SRO|1|Y|A|14
9SRO|1|Y|A|15
9SRO|1|Y|G|18
9SRO|1|Y|G|19
9SRO|1|Y|U|20
9SRO|1|Y|A|21
9SRO|1|Y|G|22
9SRO|1|Y|A|23
9SRO|1|Y|C|24
Current chains
- Chain Y
- A/P-tRNA-Leu
Nearby chains
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
- Chain f
- Large ribosomal subunit protein uL5
Coloring options: