HL_9SRO_039
3D structure
- PDB id
- 9SRO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of SKM-70S ribosomal stalled complex in the rotated state with hybrid tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- GAAACAUC
- Length
- 8 nucleotides
- Bulged bases
- 9SRO|1|a|A|196, 9SRO|1|a|A|199
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9SRO_039 not in the Motif Atlas
- Homologous match to HL_7A0S_006
- Geometric discrepancy: 0.0756
- The information below is about HL_7A0S_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_48677.1
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 22
Unit IDs
9SRO|1|a|G|194
9SRO|1|a|A|195
9SRO|1|a|A|196
9SRO|1|a|A|197
9SRO|1|a|C|198
9SRO|1|a|A|199
9SRO|1|a|U|200
9SRO|1|a|C|201
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain Z
- Transfer RNA; tRNA
- Chain k
- Large ribosomal subunit protein uL15
- Chain w
- Large ribosomal subunit protein bL28
Coloring options: