HL_9SRO_042

3D structure

PDB id

9SRO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SKM-70S ribosomal stalled complex in the rotated state with hybrid tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

9SRO|1|a|A|311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SRO_042 not in the Motif Atlas

Homologous match to HL_7A0S_010

Geometric discrepancy: 0.1158

The information below is about HL_7A0S_010

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_13999.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

9SRO|1|a|C|305
9SRO|1|a|U|306
9SRO|1|a|G|307
9SRO|1|a|G|308
9SRO|1|a|A|309
9SRO|1|a|A|310
9SRO|1|a|A|311
9SRO|1|a|G|312

Current chains

Chain a

23S rRNA

Nearby chains