HL_9SRO_044

3D structure

PDB id

9SRO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SKM-70S ribosomal stalled complex in the rotated state with hybrid tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GUGACAGCC

Length

9 nucleotides

Bulged bases

9SRO|1|a|G|329, 9SRO|1|a|A|330, 9SRO|1|a|C|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SRO_044 not in the Motif Atlas

Homologous match to HL_7A0S_012

Geometric discrepancy: 0.3747

The information below is about HL_7A0S_012

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.4

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

16

Unit IDs

9SRO|1|a|G|327
9SRO|1|a|U|328
9SRO|1|a|G|329
9SRO|1|a|A|330
9SRO|1|a|C|331
9SRO|1|a|A|332
9SRO|1|a|G|333
9SRO|1|a|C|334
9SRO|1|a|C|335

Current chains

Chain a

23S rRNA

Nearby chains

Chain e

Large ribosomal subunit protein uL4