HL_9SRO_085

3D structure

PDB id

9SRO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SKM-70S ribosomal stalled complex in the rotated state with hybrid tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UGCAAUGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SRO_085 not in the Motif Atlas

Homologous match to HL_7A0S_055

Geometric discrepancy: 0.2284

The information below is about HL_7A0S_055

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_52651.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

29

Unit IDs

9SRO|1|a|U|2324
9SRO|1|a|G|2325
9SRO|1|a|C|2326
9SRO|1|a|A|2327
9SRO|1|a|A|2328
9SRO|1|a|U|2329
9SRO|1|a|G|2330
9SRO|1|a|G|2331

Current chains

Chain a

23S rRNA

Nearby chains

Chain f

Large ribosomal subunit protein uL5

Chain l

Large ribosomal subunit protein uL16

Chain v

Large ribosomal subunit protein bL27