HL_9SRO_088

3D structure

PDB id

9SRO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SKM-70S ribosomal stalled complex in the rotated state with hybrid tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UGAAUGGAAG

Length

10 nucleotides

Bulged bases

9SRO|1|a|A|2406

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SRO_088 not in the Motif Atlas

Homologous match to HL_7A0S_058

Geometric discrepancy: 0.2032

The information below is about HL_7A0S_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51853.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

9SRO|1|a|U|2404
9SRO|1|a|G|2405
9SRO|1|a|A|2406
9SRO|1|a|A|2407
9SRO|1|a|U|2408
9SRO|1|a|G|2409
9SRO|1|a|G|2410
9SRO|1|a|A|2411
9SRO|1|a|A|2412
9SRO|1|a|G|2413

Current chains

Chain a

23S rRNA

Nearby chains

Chain k

Large ribosomal subunit protein uL15