HL_9SS0_015

3D structure

PDB id

9SS0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S ribosomal subunit RimM-KO with IF1 and IF3 (State I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGGUGAAAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SS0_015 not in the Motif Atlas

Homologous match to HL_6CZR_086

Geometric discrepancy: 0.2559

The information below is about HL_6CZR_086

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.4

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

13

Unit IDs

9SS0|1|D1|C|689
9SS0|1|D1|G|690
9SS0|1|D1|G|691
9SS0|1|D1|U|692
9SS0|1|D1|G|693
9SS0|1|D1|A|694
9SS0|1|D1|A|695
9SS0|1|D1|A|696
9SS0|1|D1|U|697
9SS0|1|D1|G|698

Current chains

Chain D1

16S Ribosomal RNA

Nearby chains

Chain AJ

Small ribosomal subunit protein uS11

Chain AT

Small ribosomal subunit protein bS21

Chain F3

Translation initiation factor IF-3